School of Systems Biology

All Items

• Extracellular Vesicles derived from Cancer demonstrate Autophagosome Properties

  Daivik Siddhi, Marissa Howard, James Erickson, Heather Branscome, Dr. Amanda Haymond, Dr. Virginia Espina, Dr. Fatah Kashanchi, Dr. Lance Liotta

• Advancing Scientific Communication about Cancer Research: How to Develop Inhibitors for PD-1 and PD-L1 and Why It Is So Important

  SIRI NIKKU, Rachel Carter, Amanda Haymond

• Analysis of Bacterial Microbiome and Human Proteome for Lung Cancer Characterization via Affinity Nanoparticles and De Novo Assisted Database Search Mass Spectrometry

  RAYMOND DEL VECCHIO, Rayan Alhammad, Ruben Magni, Alessandra Luchini

• AutoMute2.0 to Predict Disease-Causing and Neutral Mutations in Human Transmembrane Proteins

  Abhinav Pappu, Dr. Iosif I. Vaisman

• Characterization of Large EVs From Breast Cancer Cells

  Christopher Pishvaian, Yuriy Kim, Dr. Lance Liotta, Dr. Fatah Kashanchi

• Characterization of the Saliva Microbiome in Women with Suspicious Mammograms

  EMRE NALBANTOGLU, Ngoc Vuong, Ruben Magni, Virginia Espina, Lance Liotta, Alessandra Luchini

• Characterizing Interactions Between PD-1 and PD-L1 in Cell-Based Models of Ovarian Cancer and Investigating the Effect of Chemotherapy on Cancer-Derived Exosomes

  SIRI NIKKU, Amanda Haymond

• Computational Model of Vaccination Effects for COVID-19

  SHAWN KIM, Marissa Howard, Lance Liotta

• Computational Model to Analyze Calcium Imbalances in Cells Affected by Alzheimer's Disease

  RIYA DEV, Aman Ullah

• Computational study on the transmission of COVID-19 in Virginia using SIQR Model

  Benoy Sen, Dr. Aman Ullah

• Creation of Printable Protein Models from Atomic Coordinates

  Maxwell Meytin, Dr. Iosif Vaisman

• Data Analysis of Genetic Variability in Alzheimer's Affected Brains

  AKANKSHA TIBREWALA, Aman Ullah

• Data Analysis of Genetic Variability in Alzheimer’s Affected Brains

  Akanksha Tibrewala, Dr. Aman Ullah

• Development of a Model for Ductal Carcinoma in Situ Progression Using the Processing Visualization Software

  MEERA GUPTA, Marissa Howard, Lance Liotta

• Effect of TAR Binding Molecules on HIV-1 Proviral Transcription

  Rhea Tammireddi, Dr. Pooja Khatkar, Dr. Fatah Kashanchi

• Evaluating Reduced and Oxidized Abeta Peptides Using Machine Learning

  Kuber Gohil; Dr. Christopher Lockhart

• Evaluating the Viability of Saliva-based Sampling in COVID-19 Diagnostic Tests Compared to Nasopharyngeal (NP) and Oropharyngeal Swabs (OP)

  JASMINE LAOUDI, Dr. Fatah Kashanchi, Mahla Dehbandi

• Exploring Drug Resistance in Breast Cancer Using a Boolean Model

  KEERTANA YALAMANCHILI, Saleet Jafri

• Exploring Drug Resistance in Gastrointestinal Cancer Using a Network Model

  SREENIDHI SANKARARAMAN, Saleet Jafri

• Extracellular Vesicles from HTLV-1 Infected Cells Induce Secretion of Proinflammatory Cytokines in Recipient Blood Brain Barrier Cells

  Jamie Nelson, Daniel Pinto, James Erickson, Heather Branscome, Dr. Fatah Kashanchi

• Identification of substrates for Francisella novicida chitinases in order to characterize the importance of chitinase in biofilm formation

  Samuel Littman, Alex Irizarry, Dr. Monique Van Hoek

• Incorporating COVID-19 Ion Channel Adaptations to Understand Immune Response

  Vaibhav Gurunathan, Dr. Saleet Jafri

• Incorporating Ryanodine Receptor Calcium Release Channels into a Computational Model of Calcium Concentration in T-Lymphocytes

  VICKY CHEN, Saleet Jafri

• Investigating Viral Entry Routes and the Impact of SARS-CoV-2 on the Central Nervous System

  KRISHNA PAHWA, SAUMAN DAS, ELIZABETH MCCLOUGH, Fatah Kashanchi

• Machine Learning Approaches and Methods for Discriminating B-Cell Epitopes, specifically in COVID-19 Spike Proteins

  David Mastro, Dr. Iosif Vaisman

• Modeling Future Spread of COVID-19 in Different U.S. States in Light of Disparate Vaccination Rates and the Delta Variant's Rise

  DANIEL LEVERETT, Saleet Jafri

• Modeling the Effect of Gene Expression Variation on T cell Activation and Differentiation

  VAIBHAV GURUNATHAN, Saleet Jafri

• Oral Fluid Drug Testing: What Interferes With These On-Site Kits?

  VALERIE CRUZ ORTIZ, Sydney Andes, Paul Russo, Sally Rucker, Virginia Espina

• Plants Could Provide a New Dimension to Crime Scene Analysis

  TIMOTHY STOCKER, Paul Russo, Weidong Zhou, Virginia Espina

• Protect or potentiate: The Role of Common Medications in Response to Radiotherapy

  Sydney Andes, Dr. Justin Davis, Daniel Pinto, Dr. Fatah Kaschanchi, Dr. Claudius Mueller, Dr. Virginia Espina

• Proteomics Profiling Around the AMPK-AKT Signaling Pathway Using the Reverse Phase Array Technology Reveals a Predictive Model for Both Recurrence and Overall Survival in NSCLC as well as Drug Sensitivity in Ovarian Cancer

  CODY JONES, Emanuel F Petricoin

• RNA-Sequence Analysis of the mdx Mouse Model of Duchenne Muscular Dystrophy

  BHAVYA BODDU, Aman Ullah

• Testing Ab Initio Designed Antimicrobial Peptides Against Multi-Drug Resistant Acinetobacter baumannii

  Gabriel Ascoli, Fahad Alsaab, Dr. Monique Van Hoek

• The Effect of Cannabidiol and HU308 on Extracellular Vesicle Populations of HIV-1 Infected Monocytes

  Vivian Gao, Anastasia Williams, Yuriy Kim, Dr. Fatah Kashanchi

• The Use of Mass Spectrometry to Determine Fatal Intoxication of Synthetic Cannabinoids, Baclofen, and PGAs through Body Matrices in Forensic Toxicology

  ADELAIDE GANNON, Emanuel F Petricoin

• The α7 Nicotinic Acetylcholine Receptor: Computational Modeling of Channel Gating

  SOHINI BANERJEE, Aman Ullah

• Therapeutics and Vaccines in the Fight Against COVID-19

  HARRISH GANESH, ALEX KASHANCHI, Fatah Kashanchi, Anastasia Williams

• Vaccine Effect of Extracellular Vesicles from HTLV-1 Infected Cells

  Jacob Yu, Yuriy Kim, Anastasia Williams, Dr. Fatah Kashanchi